Arabidopsis membrane protein database

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August undefined, 2024

Web12 ore fa · For the Western blotting test of the Arabidopsis leaves, the protein content was measured using the method of Bradford (1976). Proteins were separated according to molecular weight by sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) on a 10%–14% gradient gel and then transferred to an immobilon-P … WebAs a first step, all 706 membrane proteins were extracted from the cyanobacteriumSynechocystis sp. genome (3,165 genes; Kaneko et al., 1996) by …

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WebMembrane-protein Interaction Network Database. MIND contains the results of a binary split ubiquitin interaction screen of Arabidopsis thaliana membrane proteins and … Web4 apr 2024 · PHD_ATX1_2_like; PHD finger found in Arabidopsis thaliana histone-lysine N-methyltransferase arabidopsis trithorax-like protein ATX1, ATX2, and similar proteins cd15662 Location: 668 → 784 ePHD_ATX1_2_like; Extended PHD finger found in Arabidopsis thaliana ATX1, -2, and similar proteins pfam00855 Location: 299 → 389 … the greenhorn evanston wy

Arabidopsis antibody resources for functional studies in plants

WebThe Arabidopsis Interactions Viewer queries a database of 70944 predicted and 4300 confirmed Arabidopsis interacting proteins. The predicted interactions (interologs) were generated by Drs. Matt Geisler and Jane Geisler-Lee (Geisler-Lee et al., 2007) at the Southern Illinois University. Their current version is Interactome 2.0. Web7 apr 2024 · The genomes of two other plant species (Arabidopsis thaliana L., rice (Oryza sativa L.)) were also obtained from the Phytozome v12 database. To identify all SUT protein- coding genes in the sugar beet genome, the protein sequence of the Arabidopsis SUT gene and the protein sequence of the rice SUT gene were downloaded from the … WebWe describe a proteome-wide binary protein-protein interaction map for the interactome network of the plant Arabidopsis thaliana containing ~6,200 highly reliable interactions between ~2,700 proteins. Community analyses of the resulting network shows the global organization of plant biological processes. Many novel hypothetical functional links ... the green hornet wiki

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Phosphoproteomics of the Arabidopsis plasma membrane and a …

Web11 lug 2016 · In Arabidopsis, 736 proteins are ... database. Here, 665 proteins ... trafficking and plays a major role in the formation of coated vesicles that selectively sort … WebHere, we describe the identification of more than 300 phosphorylation sites from Arabidopsis thaliana plasma membrane proteins. These data will be a valuable … the badmanWebThe Arabidopsis thaliana plasma membrane proton ATPase genes, AHA1 and AHA2, are the two most highly expressed isoforms of an eleven gene family, constituting approximately two thirds of the total AHA mRNA in vegetative tissues. Collectively, AHA1 and AHA2 are essential for embryo development. the bad man 1941 movie

"Web10 ago 2016 · Further, for each protein, the database provides an FMAP-generated 3D model of a TM α-helical domain as a coordinate file supplemented by the static and … " - Arabidopsis membrane protein database

Arabidopsis membrane protein database

Mapping the Arabidopsis organelle proteome PNAS

Web31 dic 2014 · Enrichment of the latter was expected as close to 25% of all experimentally localized proteins in the SUBcellular Arabidopsis database (SUBA) ... Two-dimensional electrophoresis of membrane proteins: A current challenge for immobilized pH gradients. Electrophoresis 1997, 18, 127–135. [Google Scholar] Urquhart, B.L ... Web6 giu 2002 · Arabidopsis thaliana (Mouse-ear cress) Amino acids. 434. ... osmotic water permeability of the plasma membrane (Pos), drought-induced resistance and rhizogenesis, response to glucose, high light stress, ... Protein-protein interaction databases. BioGRID. 14001 65 interactors; DIP. DIP-36706N; IntAct. P49597 34 interactors; MINT. P49597;

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Web1 set 2004 · Here, we present an analysis of several hundred phosphorylation sites on ∼200 putative plasma membrane proteins of Arabidopsis collected from multiple LC-MS/MS … WebProtein Subcellular Localization . LocDB is a expert curated database that collects experimental annotations for the subcellular localization of proteins in Human (Homo …

Web1 apr 2001 · Outer Envelope Membrane Proteins. Toc159, a GTP-binding protein, ... ESTs are present for both of these homologs within the Arabidopsis database, and their expression has been verified via northern and western-blot analysis (Jarvis et al., 1998; Gutensohn et al., 2000). Web6 apr 2024 · Further, NPF2.12 and NPF2.13, closely related proteins, are plasma membrane-localized GA and ABA importers that facilitate shoot-to-root GA12 translocation, regulating endodermal hormone accumulation.

Web24 nov 2016 · SUBA4 data adds to the SUBA3 datasets and are based on the non-redundant Arabidopsis protein set obtained from The Arabidopsis Information Resources (TAIR release 10), and the Arabidopsis mitochondrial (117) and chloroplast (87) open reading frame (ORF) sets obtained from GenBank Y08501 and AP000423, respectively. Web12 apr 2024 · The superfamily of soluble N-ethylmaleimide-sensitive factor attachment protein receptor (SNARE) proteins mediates membrane fusion during vesicular transport between endosomes and the plasma membrane in eukaryotic cells, playing a vital role in plant development and responses to biotic and abiotic stresses. Peanut (Arachis …

WebAll subcellular localisation data is from SUBA, the Arabidopsis Subcellular Database (Hooper et al., 2024). Additional protein function data is from MapMan (Usadel et al., …

WebAMPDB -- the Arabidopsis Mitochondrial Protein Database. ... Search and compare predicted membrane proteins and transporters in Arabidopsis, rice, cyanobacteria, and organellar genomes. ARTADE -- ARabidopsis Tiling-Array-based Detection of Exons. Search for Arabidopsis genes predicted by analyzing genome-wide tiling-array data in … the bad man 2022Web1 dic 2024 · The dark proteome, as we define it, is the part of the proteome where 3D structure has not been observed either by homology modeling or by experimental characterization in the protein universe. From the 550.116 proteins available in Swiss-Prot (as of July 2016), 43.2% of the eukarya universe and 49.2% of the virus universe are … the green hornet wikipediaWebA specialized database (DB) for Arabidopsis membrane proteins, ARAMEMNON, was designed that facilitates the interpretation of gene and protein sequence data by … the bad man band minneapolisWeb27 feb 2007 · Mca1 was localized to the yeast plasma membrane as an integral membrane protein and mediated Ca (2+) influx. Mca1 also increased [Ca (2+)] (cyt) upon plasma membrane distortion in Arabidopsis. The growth of MCA1-overexpressing plants was impaired in a high-calcium but not a low-calcium medium. The primary roots of mca1-null … the greenhorns bandWebOur approach was sensitive enough to quantitate phosphorylation on low abundance signaling proteins such as calcium-dependent protein kinases and receptor-like kinase family members. With this approach we identified one or more differentially phosphorylated sites in 76 membrane-associated proteins including a number of defense-related … the bad man - datelinehttp://interactome.dfci.harvard.edu/A_thaliana/ the greenhorn vernonWebSalt tolerance is an important trait in soybean cultivation and breeding. Plant responses to salt stress include physiological and biochemical changes that affect the movement of water across the plasma membrane. Plasma membrane intrinsic proteins (PIPs) localize to the plasma membrane and regulate the water and solutes flow. In this study, quantitative … the badman and the angel